Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AEI46923.1Monooxygenase FAD-binding protein. (378 aa)    
Predicted Functional Partners:
AEI48721.1
Methyltransferase type 11.
  
 0.761
AEI46925.1
Hypothetical protein.
 
     0.755
Runsl_0476
Fumarylacetoacetate (FAA) hydrolase.
 
  
 0.705
AEI46922.1
Histidinol dehydrogenase.
 
     0.689
AEI46918.1
Cyclase family protein.
 
     0.677
AEI46921.1
3-oxoacyl-(acyl-carrier-protein) reductase.
 
    0.604
AEI50948.1
ABC-1 domain-containing protein.
   
 0.581
AEI46926.1
Biphenyl-2,3-diol 1,2-dioxygenase.
 
   
 0.543
AEI46947.1
Amidohydrolase 2.
 
  
 0.538
AEI46924.1
Hypothetical protein.
       0.534
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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