STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46926.1Biphenyl-2,3-diol 1,2-dioxygenase. (329 aa)    
Predicted Functional Partners:
AEI46925.1
Hypothetical protein.
 
     0.847
AEI47971.1
LmbE family protein.
 
     0.770
AEI46947.1
Amidohydrolase 2.
 
   
 0.747
AEI46950.1
Hypothetical protein.
  
     0.672
AEI46962.1
Hypothetical protein.
 
   
 0.664
AEI47968.1
PrpF protein.
 
   
 0.651
AEI46918.1
Cyclase family protein.
 
     0.650
AEI47969.1
Phosphogluconate dehydrogenase, NAD-binding protein.
  
     0.605
AEI46954.1
Long-chain-fatty-acid--CoA ligase.
  
     0.593
AEI46923.1
Monooxygenase FAD-binding protein.
 
   
 0.543
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.