STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI46928.1Transcriptional regulator, AraC family. (302 aa)    
Predicted Functional Partners:
AEI49014.1
Transcriptional regulator with cupin sensor, AraC family.
  
     0.663
AEI49682.1
Transcriptional regulator, AraC family.
  
   0.635
AEI50474.1
Transcriptional regulator, AraC family.
  
     0.633
AEI49991.1
Transcriptional regulator with cupin sensor, AraC family.
  
   0.619
AEI51466.1
Transcriptional regulator, AraC family.
  
   0.615
AEI51875.1
Transcriptional regulator, AraC family.
  
   0.605
AEI49700.1
Transcriptional regulator, AraC family.
  
   0.577
AEI47747.1
Transcriptional regulator with cupin sensor, AraC family.
  
   0.574
AEI46929.1
Lipolytic protein G-D-S-L family.
 
    0.557
AEI49503.1
Transcriptional regulator, AraC family.
  
     0.534
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.