Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AEI46930.1Transcriptional regulator, LacI family. (339 aa)    
Predicted Functional Partners:
AEI50717.1
Glutamate synthase (ferredoxin).
    
 
 0.794
AEI46929.1
Lipolytic protein G-D-S-L family.
     
 0.584
AEI49999.1
ABC-type transporter, integral membrane subunit.
 
  
 0.583
AEI47073.1
Periplasmic binding protein/LacI transcriptional regulator.
 
  
 0.439
AEI51072.1
Ribokinase.
  
 0.432
AEI46931.1
Xylan 1,4-beta-xylosidase.
     
 0.420
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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