STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46962.1Hypothetical protein. (149 aa)    
Predicted Functional Partners:
AEI46963.1
FAD dependent oxidoreductase.
 
     0.867
AEI46947.1
Amidohydrolase 2.
 
  
 0.780
AEI46954.1
Long-chain-fatty-acid--CoA ligase.
 
  
 0.766
AEI48721.1
Methyltransferase type 11.
  
 0.761
AEI47973.1
Biphenyl-2,3-diol 1,2-dioxygenase.
 
   
 0.701
AEI46926.1
Biphenyl-2,3-diol 1,2-dioxygenase.
 
   
 0.664
AEI46970.1
4-hydroxybenzoate 3-monooxygenase.
  
     0.593
AEI50948.1
ABC-1 domain-containing protein.
   
 0.581
AEI47828.1
Hydroxymethylglutaryl-CoA reductase (NADPH).
   
  
 0.503
AEI46894.1
Linalool 8-monooxygenase.
 
 
 0.494
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.