STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46967.13-oxoacid CoA-transferase, B subunit. (448 aa)    
Predicted Functional Partners:
AEI48170.1
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein.
  
 0.989
AEI51807.1
3-hydroxybutyryl-CoA epimerase.
  
 0.989
AEI48074.1
acetyl-CoA acetyltransferase.
 
 
 0.982
AEI51808.1
acetyl-CoA acetyltransferase.
 
 0.981
AEI51456.1
Hydroxymethylglutaryl-CoA lyase.
  
 
 0.974
AEI51396.1
3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.970
AEI51429.1
acetoacetyl-CoA synthase.
  
 
 0.945
AEI46965.1
Beta-ketoadipyl CoA thiolase.
 
 
 0.927
AEI47498.1
Biotin/lipoyl attachment domain-containing protein.
  
 
 0.852
AEI48088.1
Pyruvate carboxylase.
  
 
 0.852
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.