STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46972.13-carboxy-cis,cis-muconate cycloisomerase. (438 aa)    
Predicted Functional Partners:
AEI46971.1
3-oxoadipate enol-lactonase.
 
 0.998
AEI46973.1
Protocatechuate 3,4-dioxygenase, alpha subunit.
 
 
 0.988
AEI46974.1
Protocatechuate 3,4-dioxygenase, beta subunit.
 
 
 0.985
AEI50074.1
Phosphoribosylaminoimidazole carboxylase, ATPase subunit.
  
 
 0.973
AEI50712.1
Phosphoribosylaminoimidazole-succinocarboxamide synthase.
  
 
 0.972
AEI51736.1
Phosphoribosylaminoimidazole carboxylase, catalytic subunit.
  
 
 0.972
AEI48752.1
Amidophosphoribosyltransferase.
  
 
 0.971
AEI47554.1
Phosphoribosylformylglycinamidine cyclo-ligase.
  
 
 0.970
AEI49432.1
Phosphoribosylamine--glycine ligase.
  
 
 0.966
AEI49547.1
Intradiol ring-cleavage dioxygenase.
  
 
 0.914
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.