STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46973.1Protocatechuate 3,4-dioxygenase, alpha subunit. (174 aa)    
Predicted Functional Partners:
AEI46972.1
3-carboxy-cis,cis-muconate cycloisomerase.
 
 
 0.988
AEI46970.1
4-hydroxybenzoate 3-monooxygenase.
 
  
 0.982
AEI46974.1
Protocatechuate 3,4-dioxygenase, beta subunit.
 
  
 
0.963
AEI49547.1
Intradiol ring-cleavage dioxygenase.
     
  0.900
AEI46971.1
3-oxoadipate enol-lactonase.
 
  
 0.873
AEI46945.1
Hypothetical protein.
  
   
 0.671
AEI46975.1
Transcriptional regulator, AraC family.
 
     0.614
AEI46967.1
3-oxoacid CoA-transferase, B subunit.
 
  
 0.585
AEI46947.1
Amidohydrolase 2.
  
     0.562
AEI46963.1
FAD dependent oxidoreductase.
 
   
 0.526
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.