STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46989.1Regulatory protein DeoR. (332 aa)    
Predicted Functional Partners:
AEI48244.1
DNA-directed RNA polymerase subunit beta.
    
 
 0.752
AEI50967.1
RNA polymerase, sigma 70 subunit, RpoD subfamily.
    
   0.741
AEI48098.1
DNA-directed RNA polymerase subunit alpha.
    
   0.734
AEI48245.1
DNA-directed RNA polymerase subunit beta'.
    
 
 0.734
AEI50587.1
Hypothetical protein.
    
   0.718
AEI46988.1
Glyoxalase/bleomycin resistance protein/dioxygenase.
     
 0.610
AEI46987.1
Transcription activator effector binding protein.
       0.583
AEI46990.1
Hypothetical protein.
       0.557
Runsl_2724
Regulatory protein ArsR.
  
     0.424
Runsl_2762
Glyoxalase/bleomycin resistance protein/dioxygenase.
 
    0.416
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.