STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47005.140-residue YVTN family beta-propeller repeat protein. (917 aa)    
Predicted Functional Partners:
AEI47004.1
TonB-dependent receptor.
 
 
   0.745
AEI48759.1
Xylose isomerase domain-containing protein TIM barrel.
  
     0.586
AEI49271.1
Hypothetical protein.
 
   0.546
AEI51812.1
Phosphoglycerate mutase.
  
     0.533
AEI47003.1
Phosphoesterase.
 
    
0.482
AEI51177.1
Hypothetical protein.
  
     0.480
AEI49130.1
Protein of unknown function DUF1648.
  
     0.454
AEI48209.1
Hypothetical protein.
 
     0.414
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.