STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47036.1Ammonium transporter. (440 aa)    
Predicted Functional Partners:
AEI50717.1
Glutamate synthase (ferredoxin).
 
  
 0.819
AEI47784.1
Signal transduction histidine kinase, nitrogen specific, NtrB.
  
 
 0.807
AEI47037.1
Outer membrane protein.
     
 0.637
AEI51256.1
Aconitate hydratase.
  
  
 0.496
AEI48983.1
Nitrate reductase., Nitrite reductase (NAD(P)H).
  
  
 0.489
AEI50716.1
Glutamate synthase, NADH/NADPH, small subunit.
 
  
 0.487
AEI48931.1
NAD+ synthetase.
     
 0.465
Runsl_1927
Glutamate--ammonia ligase.
  
  
 0.441
AEI49257.1
Glutamate--ammonia ligase.
  
  
 0.441
AEI51537.1
Multi-copper polyphenol oxidoreductase, laccase.
 
      0.439
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.