STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47037.1Outer membrane protein. (450 aa)    
Predicted Functional Partners:
AEI47036.1
Ammonium transporter.
     
 0.637
AEI49631.1
Tetratricopeptide domain protein.
  
     0.547
AEI50358.1
Hypothetical protein.
  
     0.484
AEI48014.1
Hypothetical protein.
  
     0.483
AEI48021.1
Hypothetical protein.
  
     0.477
AEI49877.1
Hypothetical protein.
  
     0.471
AEI46636.1
Glycosyl transferase family 39.
  
     0.435
AEI50238.1
Hypothetical protein.
  
     0.431
AEI47031.1
Hypothetical protein.
  
     0.430
AEI46594.1
Hypothetical protein.
   
   0.425
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.