STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI47039.1acyl-CoA reductase. (340 aa)    
Predicted Functional Partners:
Runsl_2546
Hypothetical protein.
 
 
 
 0.821
AEI48136.1
Hypothetical protein.
  
     0.753
AEI50962.1
Gliding motility-associated protein GldC.
  
     0.740
AEI46485.1
Hypothetical protein.
  
     0.733
AEI50098.1
Orn/DAP/Arg decarboxylase 2.
  
   
 0.728
AEI51455.1
Protein of unknown function DUF2480.
  
     0.713
AEI47038.1
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
 
  
 0.697
AEI46540.1
ATP-dependent Clp protease adaptor protein ClpS.
  
 
   0.683
AEI47874.1
GH3 auxin-responsive promoter.
 
 
 
 0.666
AEI49466.1
Acetylornithine transaminase.
 
 
 0.642
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.