STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47051.1NUDIX hydrolase. (141 aa)    
Predicted Functional Partners:
AEI51737.1
Peptidoglycan-binding lysin domain protein.
  
     0.687
AEI49877.1
Hypothetical protein.
  
     0.638
AEI51196.1
Protein of unknown function DUF303 acetylesterase.
  
     0.564
AEI46636.1
Glycosyl transferase family 39.
  
     0.562
AEI51795.1
Protein of unknown function DUF303 acetylesterase.
  
     0.531
AEI50325.1
Glycosyl transferase family 39.
  
     0.530
AEI47052.1
Protein of unknown function DUF477.
       0.485
AEI50900.1
Tetratricopeptide TPR_1 repeat-containing protein.
  
     0.452
AEI47182.1
VanZ family protein.
  
     0.451
AEI46505.1
Protein of unknown function DUF349.
 
     0.422
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.