STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47052.1Protein of unknown function DUF477. (255 aa)    
Predicted Functional Partners:
AEI47053.1
Protein of unknown function DUF477.
 
     0.917
AEI47054.1
LemA family protein.
 
  
 0.909
AEI49357.1
Cytochrome c oxidase subunit I.
   
   0.785
AEI49356.1
Cytochrome c oxidase subunit II.
   
   0.779
AEI50649.1
LemA family protein.
 
  
 0.540
AEI48818.1
FAD dependent oxidoreductase.
    
   0.527
AEI50709.1
Malate dehydrogenase (acceptor).
    
   0.527
AEI47051.1
NUDIX hydrolase.
       0.485
AEI46530.1
Cytochrome c oxidase subunit III.
    
   0.431
AEI49360.1
Cytochrome c oxidase subunit III.
    
   0.431
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.