STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47055.1GH3 auxin-responsive promoter. (498 aa)    
Predicted Functional Partners:
AEI51169.1
Hypothetical protein.
  
     0.753
AEI50587.1
Hypothetical protein.
 
     0.740
AEI49878.1
Uroporphyrinogen III synthase HEM4.
  
     0.725
AEI47446.1
Restriction endonuclease, type I, EcoRI, R subunit/Type III.
  
     0.697
AEI48203.1
Hypothetical protein.
  
     0.675
AEI46523.1
PUR-alpha/beta/gamma DNA/RNA-binding protein.
  
     0.645
AEI47066.1
Exonuclease RNase T and DNA polymerase III.
  
     0.638
AEI47039.1
acyl-CoA reductase.
 
 
 
 0.634
AEI50738.1
Hypothetical protein.
  
     0.620
AEI50432.1
Surface antigen (D15).
  
     0.596
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: medium (62%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.