STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI47058.1Choline dehydrogenase. (547 aa)    
Predicted Functional Partners:
AEI50655.1
Phosphatidylserine decarboxylase proenzyme.
    
  0.800
AEI51775.1
Phospholipase C, phosphocholine-specific.
     
  0.800
AEI48776.1
WD40 repeat-containing protein.
    
 0.611
AEI47059.1
Hypothetical protein.
       0.495
AEI51877.1
Tyrosyl-tRNA synthetase.
 
  
   0.490
AEI50707.1
Hypothetical protein.
    
 0.466
AEI50982.1
Ankyrin.
    
 0.466
AEI47060.1
Hypothetical protein.
       0.461
AEI47064.1
ABC transporter related protein.
  
    0.449
AEI47061.1
Transcriptional regulator, GntR family.
       0.440
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.