STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47073.1Periplasmic binding protein/LacI transcriptional regulator. (309 aa)    
Predicted Functional Partners:
AEI47074.1
ABC-type transporter, integral membrane subunit.
 0.999
AEI47075.1
Monosaccharide-transporting ATPase.
 0.991
AEI49998.1
Monosaccharide-transporting ATPase.
 
 0.943
AEI47095.1
Histidine kinase.
  
 
 0.886
AEI49491.1
Multi-sensor hybrid histidine kinase.
   
 
 0.881
AEI51397.1
Multi-sensor hybrid histidine kinase.
  
 
 0.878
AEI49506.1
Two component transcriptional regulator, AraC family.
 
    
 0.877
AEI48656.1
Multi-sensor hybrid histidine kinase.
  
 
 0.870
AEI49757.1
Multi-sensor hybrid histidine kinase.
   
 
 0.848
AEI49999.1
ABC-type transporter, integral membrane subunit.
 
 
0.808
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.