STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47078.1HEPN domain protein. (128 aa)    
Predicted Functional Partners:
AEI47077.1
DNA polymerase beta domain protein region.
 
     0.950
AEI49425.1
DNA polymerase beta domain protein region.
 
     0.712
AEI49285.1
DNA polymerase beta domain protein region.
 
     0.690
AEI51749.1
DNA polymerase beta domain protein region.
 
     0.628
AEI46917.1
Protein of unknown function DUF820.
  
     0.560
AEI50004.1
Protein of unknown function DUF820.
  
     0.540
AEI47076.1
Hypothetical protein.
       0.477
AEI48600.1
Protein of unknown function DUF820.
  
     0.472
AEI48262.1
Protein of unknown function DUF433.
  
     0.466
AEI48299.1
Protein of unknown function DUF433.
  
     0.465
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.