STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47087.1Hypothetical protein. (407 aa)    
Predicted Functional Partners:
AEI47088.1
Hypothetical protein.
 
  
 0.887
AEI47086.1
Xylose isomerase domain-containing protein TIM barrel.
 
     0.885
AEI51843.1
Triosephosphate isomerase.
   
 
 0.789
AEI47085.1
Oxidoreductase domain protein.
 
   
 0.787
AEI47070.1
Heme-binding protein.
 
     0.757
AEI47093.1
Protein of unknown function DUF1080.
 
     0.753
AEI47092.1
Xylose isomerase domain-containing protein TIM barrel.
 
     0.684
AEI47309.1
Hypothetical protein.
 
     0.596
AEI47091.1
Hypothetical protein.
 
     0.513
AEI51833.1
Protein of unknown function DUF1549.
  
     0.508
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.