STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47090.1Xylose isomerase domain-containing protein TIM barrel. (275 aa)    
Predicted Functional Partners:
AEI48958.1
Oxidoreductase domain protein.
  
 
  0.917
AEI50227.1
Oxidoreductase domain protein.
   
 
  0.905
AEI50415.1
Oxidoreductase domain protein.
   
 
  0.905
AEI50704.1
Xylose isomerase domain-containing protein TIM barrel.
     
  0.900
AEI47089.1
Alpha/beta hydrolase fold protein.
 
     0.872
AEI47091.1
Hypothetical protein.
 
     0.772
AEI47092.1
Xylose isomerase domain-containing protein TIM barrel.
 
     0.682
AEI47830.1
alpha-L-arabinofuranosidase domain protein.
  
     0.629
AEI47093.1
Protein of unknown function DUF1080.
 
     0.608
AEI50554.1
Hypothetical protein.
  
     0.559
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.