STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47102.1Ornithine aminotransferase. (411 aa)    
Predicted Functional Partners:
AEI47905.1
Delta-1-pyrroline-5-carboxylate dehydrogenase.
 
 0.954
AEI49047.1
Glutamate 5-kinase.
   
 0.925
AEI47897.1
Acetylglutamate kinase.
  
 0.889
AEI50963.1
N-acetyl-gamma-glutamyl-phosphate reductase.
  
  
 0.830
AEI50280.1
Peptidase M23.
 
  
   0.819
AEI48301.1
Argininosuccinate lyase.
  
  
 0.814
AEI46642.1
Argininosuccinate synthase.
  
 
 0.812
AEI48813.1
N-acetylornithine carbamoyltransferase.
  
  
 0.735
AEI47006.1
Diaminobutyrate decarboxylase.
 
 
  
 0.551
AEI50717.1
Glutamate synthase (ferredoxin).
  
  
 0.525
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.