STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47110.1Processing peptidase. (412 aa)    
Predicted Functional Partners:
AEI51801.1
NADH-quinone oxidoreductase, F subunit.
   
 0.775
AEI46599.1
ATP synthase subunit delta.
  
 0.750
AEI47383.1
ATP synthase subunit alpha.
   
 0.688
AEI51802.1
NADH dehydrogenase (quinone).
   
 0.684
AEI51800.1
NADH-quinone oxidoreductase, E subunit.
   
 
 0.607
AEI47111.1
Caffeoyl-CoA O-methyltransferase.
  
    0.599
AEI48946.1
FAD dependent oxidoreductase.
   
 0.589
AEI47109.1
tRNA/rRNA methyltransferase (SpoU).
  
   0.582
AEI47444.1
Rieske (2Fe-2S) iron-sulfur domain protein.
   
 0.580
AEI51481.1
Rieske (2Fe-2S) iron-sulfur domain protein.
   
 0.580
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.