STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI47129.1TonB-dependent receptor plug. (775 aa)    
Predicted Functional Partners:
AEI47130.1
Hypothetical protein.
       0.778
AEI49693.1
TonB-dependent receptor plug.
  
 
  0.676
AEI47128.1
Hypothetical protein.
       0.566
AEI48772.1
Outer membrane chaperone Skp (OmpH).
  
     0.538
AEI46551.1
Protein of unknown function, membrane YfhO.
  
     0.528
AEI49016.1
RagB/SusD domain-containing protein.
  
 
   0.518
AEI49399.1
Metallophosphoesterase.
  
     0.512
AEI50966.1
TonB-dependent receptor plug.
  
     0.509
AEI49032.1
TonB-dependent receptor plug.
  
 
  0.504
AEI50498.1
Hypothetical protein.
  
     0.487
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.