STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47150.1Peptidase M14 carboxypeptidase A. (638 aa)    
Predicted Functional Partners:
AEI46698.1
Peptidase S9 prolyl oligopeptidase.
  
     0.723
AEI46821.1
Peptidase M14 carboxypeptidase A.
  
     0.644
AEI46816.1
Peptidase M14 carboxypeptidase A.
  
     0.617
AEI47149.1
Hypothetical protein.
 
     0.576
AEI51014.1
Polysaccharide biosynthesis protein.
  
     0.550
AEI46822.1
Peptidase S41.
  
     0.525
AEI51438.1
Glycerophosphoryl diester phosphodiesterase.
  
     0.506
AEI47088.1
Hypothetical protein.
  
     0.503
AEI47501.1
Peptidase S41.
  
     0.458
AEI49266.1
Protein of unknown function DUF885.
  
     0.441
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.