STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47158.1Unspecific monooxygenase. (463 aa)    
Predicted Functional Partners:
AEI48486.1
DNA polymerase I.
    
 0.702
AEI47362.1
Glycosyltransferase 28 domain protein.
 
 
 0.612
AEI51890.1
Nitric oxide dioxygenase.
  
 0.538
AEI48110.1
Ribosomal protein L6.
    
  0.526
AEI46923.1
Monooxygenase FAD-binding protein.
 
 
 0.497
AEI46535.1
SMC domain protein.
    
 0.494
AEI47159.1
OmpA/MotB domain protein.
       0.473
AEI47157.1
Pyruvate dehydrogenase (acetyl-transferring).
     
 0.468
AEI46581.1
Putative glycosyltransferase.
  
 
 0.463
AEI49435.1
Hypothetical protein.
  
 
 0.463
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.