STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47159.1OmpA/MotB domain protein. (297 aa)    
Predicted Functional Partners:
AEI49491.1
Multi-sensor hybrid histidine kinase.
  
  
 0.907
AEI49000.1
Signal transduction histidine kinase with CheB and CheR activity.
  
  
 0.893
AEI48025.1
OmpA/MotB domain protein.
  
 
 0.775
AEI46633.1
OmpA/MotB domain protein.
  
 
 0.774
AEI49494.1
CheB methylesterase.
 
  
 0.705
AEI48364.1
OmpA/MotB domain protein.
  
 
 0.680
AEI49759.1
CheB methylesterase.
 
  
 0.677
AEI49758.1
MCP methyltransferase, CheR-type.
 
  
 0.661
AEI49493.1
MCP methyltransferase, CheR-type.
 
  
 0.659
AEI48776.1
WD40 repeat-containing protein.
  
 
 0.650
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.