STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47161.1Carboxyl-terminal protease. (550 aa)    
Predicted Functional Partners:
AEI46853.1
Tetratricopeptide TPR_2 repeat-containing protein.
   
 
 0.846
AEI47160.1
Hypothetical protein.
       0.500
AEI49627.1
Peptidase S41.
  
     0.473
AEI50968.1
Polyribonucleotide nucleotidyltransferase.
 
    0.468
AEI48194.1
Tetratricopeptide domain protein.
  
 
   0.457
AEI49405.1
Lytic transglycosylase catalytic.
 
  
 0.452
AEI50705.1
Double-transmembrane region domain protein.
  
     0.439
AEI47252.1
Tetratricopeptide TPR_2 repeat-containing protein.
 
 
 
 0.433
AEI49948.1
Ferric uptake regulator, Fur family.
  
     0.414
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.