STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47178.1Conserved hypothetical protein CHP02757. (256 aa)    
Predicted Functional Partners:
AEI47177.1
Hypothetical protein.
       0.773
AEI47250.1
Exodeoxyribonuclease III Xth.
  
 0.752
AEI47179.1
Hypothetical protein.
       0.561
AEI47180.1
PilT protein domain protein.
       0.561
AEI48486.1
DNA polymerase I.
   
 
 0.526
AEI47175.1
Superfamily I DNA and RNA helicase and helicase subunits-like protein.
       0.524
AEI47176.1
Hypothetical protein.
       0.524
AEI51899.1
Signal peptidase I.
 
  
 0.482
AEI50632.1
Protein of unknown function DUF164.
 
     0.463
AEI51718.1
Membrane-associated zinc metalloprotease.
 
   
 0.453
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.