STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47184.1Hypothetical protein. (125 aa)    
Predicted Functional Partners:
AEI47185.1
(R)-citramalate synthase.
       0.678
AEI51486.1
ABC transporter related protein.
  
 
 0.651
AEI47186.1
3-isopropylmalate dehydratase, small subunit.
       0.631
AEI47183.1
3-isopropylmalate dehydrogenase.
       0.620
AEI47187.1
3-isopropylmalate dehydratase, large subunit.
       0.610
AEI47181.1
GCN5-related N-acetyltransferase.
     
 0.435
AEI47182.1
VanZ family protein.
       0.426
AEI47188.1
Transcriptional regulator, AraC family.
  
    0.420
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.