STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47185.1(R)-citramalate synthase. (499 aa)    
Predicted Functional Partners:
AEI47186.1
3-isopropylmalate dehydratase, small subunit.
 
 
 0.998
AEI47187.1
3-isopropylmalate dehydratase, large subunit.
 
 
 0.997
AEI47196.1
Acetolactate synthase, small subunit.
 
 
 0.978
AEI47197.1
Acetolactate synthase, large subunit, biosynthetic type.
 
 
 0.965
AEI47183.1
3-isopropylmalate dehydrogenase.
 
 
 0.925
AEI47057.1
2-isopropylmalate synthase.
 
 
 
0.912
AEI51223.1
2-oxoacid:acceptor oxidoreductase, alpha subunit.
  
 
 0.865
AEI51123.1
Malic protein NAD-binding protein.
  
 
 0.860
Runsl_3317
L-lactate dehydrogenase (cytochrome).
    
 0.846
AEI51741.1
Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit.
   
 
 0.830
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.