STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI47190.1Protein of unknown function DUF86. (83 aa)    
Predicted Functional Partners:
Runsl_0101
DNA polymerase beta domain protein region.
 
 
 0.935
AEI49425.1
DNA polymerase beta domain protein region.
 
 
 0.828
AEI47077.1
DNA polymerase beta domain protein region.
 
 
 0.807
AEI51749.1
DNA polymerase beta domain protein region.
 
 
 0.802
AEI49285.1
DNA polymerase beta domain protein region.
 
  
  0.763
AEI47192.1
Uncharacterized protein family UPF0150.
 
   
 0.654
AEI47189.1
Hypothetical protein.
       0.551
Runsl_0751
YcfA family protein.
 
   
 0.524
AEI51748.1
HEPN domain protein.
  
     0.505
AEI49424.1
HEPN domain protein.
  
     0.459
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.