STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47192.1Uncharacterized protein family UPF0150. (75 aa)    
Predicted Functional Partners:
Runsl_0751
YcfA family protein.
 
 
 
 0.993
AEI47193.1
Threonine dehydratase.
       0.741
AEI47190.1
Protein of unknown function DUF86.
 
   
 0.654
AEI50448.1
Plasmid stabilization system.
 
   
 0.554
AEI48299.1
Protein of unknown function DUF433.
  
     0.541
AEI48262.1
Protein of unknown function DUF433.
  
     0.518
AEI47411.1
Protein of unknown function DUF433.
  
     0.512
AEI48486.1
DNA polymerase I.
     
 0.483
AEI49098.1
Protein of unknown function DUF433.
  
     0.482
AEI48169.1
Protein of unknown function DUF433.
  
     0.473
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.