STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47201.1Primosomal protein N'. (838 aa)    
Predicted Functional Partners:
AEI46519.1
Methionyl-tRNA formyltransferase.
 
    0.892
AEI50932.1
Single-strand binding protein.
 
 
 
 0.826
Runsl_4484
Single-strand DNA-binding protein.
 
 
 
 0.813
AEI51356.1
Single-strand binding protein.
 
 
 
 0.813
AEI50586.1
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase.
 
    0.750
AEI47200.1
Pyruvate kinase.
       0.707
AEI50209.1
single-stranded-DNA-specific exonuclease RecJ.
 
     0.702
AEI48480.1
Phenylalanyl-tRNA synthetase beta chain.
 
   
 0.693
AEI50856.1
Transcription-repair coupling factor.
 
   
 0.658
AEI46687.1
Peptidyl-tRNA hydrolase.
  
    0.654
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.