STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47219.1Oxidoreductase, Fe-S subunit. (446 aa)    
Predicted Functional Partners:
AEI46484.1
Protein of unknown function DUF224 cysteine-rich region domain protein.
     0.981
AEI47218.1
Hypothetical protein.
       0.773
AEI49498.1
Lactate utilization protein B/C.
  
 
 0.701
AEI50734.1
Electron transfer flavoprotein alpha/beta-subunit.
 
  
 0.685
AEI48170.1
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein.
 
  
 0.626
AEI46485.1
Hypothetical protein.
 
     0.584
AEI47220.1
Mg-chelatase subunit ChlI-like protein.
 
     0.558
AEI50733.1
Electron transfer flavoprotein alpha subunit.
 
  
 0.537
AEI49499.1
Lactate utilization protein B/C.
  
 
 0.534
AEI49351.1
Molybdopterin oxidoreductase, iron-sulfur binding subunit.
 
  
 0.533
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.