STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47229.1Dihydrodipicolinate synthase. (301 aa)    
Predicted Functional Partners:
AEI50214.1
Aldehyde dehydrogenase (NADP(+)).
 
 
 0.961
AEI50282.1
FAD dependent oxidoreductase.
    
 0.905
AEI48979.1
4-hydroxyproline epimerase.
 
   
 0.822
AEI50165.1
Proline racemase.
 
   
 0.762
AEI50163.1
D-amino-acid dehydrogenase.
 
   
 0.739
AEI51898.1
Dihydrodipicolinate reductase.
 
  
 0.722
AEI47943.1
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C.
  
  
 0.584
AEI50235.1
Chorismate mutase.
  
  
 0.572
AEI47228.1
Transcriptional regulator, AraC family.
       0.563
AEI51848.1
Diaminopimelate decarboxylase.
  
 0.522
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.