STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI47242.13'-5' exonuclease, PolB. (259 aa)    
Predicted Functional Partners:
AEI48486.1
DNA polymerase I.
  
 0.990
AEI47860.1
DNA polymerase III, beta subunit.
  
 0.972
AEI47899.1
Hypothetical protein.
  
 0.952
AEI50268.1
DNA-directed DNA polymerase.
   
 0.943
AEI51617.1
DNA-directed DNA polymerase.
   
 0.943
AEI49566.1
Protein recA.
  
 0.831
AEI47259.1
DNA mismatch repair protein mutL.
   
 0.818
AEI49011.1
DNA mismatch repair protein mutS.
   
 0.807
AEI51884.1
DNA mismatch repair protein MutS domain protein.
   
 0.807
AEI48259.1
Helicase.
   
 0.783
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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