STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47242.13'-5' exonuclease, PolB. (259 aa)    
Predicted Functional Partners:
AEI47860.1
DNA polymerase III, beta subunit.
  
 0.937
AEI48486.1
DNA polymerase I.
  
 0.922
AEI47899.1
Hypothetical protein.
  
 0.876
AEI50268.1
DNA-directed DNA polymerase.
   
 0.851
AEI51617.1
DNA-directed DNA polymerase.
   
 0.851
AEI46535.1
SMC domain protein.
  
 0.846
AEI49566.1
Protein recA.
  
 0.845
AEI49510.1
DNA topoisomerase.
   
 
 0.781
AEI51886.1
Heat shock protein Hsp90.
   
 
 0.747
AEI47918.1
Ribonuclease H.
   
 
 0.740
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.