STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI47243.1Peptide deformylase. (190 aa)    
Predicted Functional Partners:
AEI46519.1
Methionyl-tRNA formyltransferase.
 
 0.926
AEI51721.1
50S ribosomal protein L20.
 
 
 0.915
AEI47941.1
50S ribosomal protein L21.
 
 
 0.904
AEI49950.1
Trigger factor.
  
 
 0.894
AEI50889.1
30S ribosomal protein S20.
  
 
 0.888
AEI47940.1
50S ribosomal protein L27.
 
   0.887
AEI49526.1
30S ribosomal protein S21.
  
 
 0.886
AEI47592.1
Ribosomal protein L13.
 
   0.884
AEI48097.1
50S ribosomal protein L17.
 
 
   0.882
AEI51675.1
50S ribosomal protein L9.
 
   0.881
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.