STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47244.1Holliday junction resolvase. (137 aa)    
Predicted Functional Partners:
AEI48468.1
UPF0301 protein yqgE.
  
  
 0.830
AEI47558.1
alanyl-tRNA synthetase.
 
  
 0.808
AEI47243.1
Peptide deformylase.
       0.689
AEI47242.1
3'-5' exonuclease, PolB.
       0.529
AEI51103.1
tRNA dimethylallyltransferase.
  
    0.516
AEI51850.1
tRNA dimethylallyltransferase.
  
    0.516
AEI48916.1
Holliday junction ATP-dependent DNA helicase ruvA.
 
  
 0.437
AEI49279.1
UvrABC system protein C.
  
    0.428
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.