STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI47245.1Protease Do. (507 aa)    
Predicted Functional Partners:
AEI50099.1
Glycerol kinase.
   
 0.755
AEI47558.1
alanyl-tRNA synthetase.
  
 
 0.579
AEI51912.1
Aminotransferase class V.
    
  0.576
AEI49491.1
Multi-sensor hybrid histidine kinase.
  
  
 0.573
AEI47197.1
Acetolactate synthase, large subunit, biosynthetic type.
     
 0.572
AEI49757.1
Multi-sensor hybrid histidine kinase.
  
  
 0.556
AEI47618.1
Two component transcriptional regulator, AraC family.
  
 
 0.552
AEI51718.1
Membrane-associated zinc metalloprotease.
 
  
 0.536
AEI50334.1
OmpA/MotB domain protein.
   
 
 0.532
AEI49505.1
Response regulator receiver sensor signal transduction histidine kinase.
  
  
 0.524
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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