STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47250.1Exodeoxyribonuclease III Xth. (257 aa)    
Predicted Functional Partners:
AEI49802.1
DNA-(apurinic or apyrimidinic site) lyase.
 
 0.973
AEI47860.1
DNA polymerase III, beta subunit.
   
 0.906
AEI50930.1
A/G-specific adenine glycosylase.
    
 0.885
AEI48529.1
Endonuclease III.
 0.847
AEI48075.1
Pseudouridine synthase Rsu.
  
    0.788
AEI51430.1
Pseudouridine synthase Rsu.
  
    0.788
AEI51814.1
Pseudouridine synthase Rsu.
  
    0.788
AEI47178.1
Conserved hypothetical protein CHP02757.
  
 0.752
AEI46513.1
Uracil-DNA glycosylase.
   
 0.744
AEI48486.1
DNA polymerase I.
  
 0.743
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.