STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI47254.1Peptidase M23. (483 aa)    
Predicted Functional Partners:
AEI51128.1
Protein of unknown function DUF214.
 
 
 
 0.967
AEI47253.1
Hypothetical protein.
 
     0.779
AEI47252.1
Tetratricopeptide TPR_2 repeat-containing protein.
 
  
 0.736
AEI46655.1
Peptidase M23.
 
   
 0.646
AEI47712.1
Phosphonate-transporting ATPase.
 
   
 0.591
AEI49439.1
Cell wall hydrolase/autolysin.
 
  
 0.563
AEI47255.1
3-methyl-2-oxobutanoatehydroxymethyltransferase.
       0.499
AEI47491.1
PASTA domain containing protein.
  
     0.484
AEI49949.1
(p)ppGpp synthetase I, SpoT/RelA.
 
    0.459
AEI50432.1
Surface antigen (D15).
 
   
 0.448
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.