STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47255.13-methyl-2-oxobutanoatehydroxymethyltransferase. (274 aa)    
Predicted Functional Partners:
AEI47353.1
Pantothenate synthetase.
  
 0.997
AEI47354.1
Aspartate 1-decarboxylase.
 
  
 0.970
AEI47198.1
Dihydroxy-acid dehydratase.
     
 0.915
AEI48534.1
D-amino-acid transaminase.
    
 0.914
AEI49519.1
Branched-chain amino acid aminotransferase.
    
 0.914
AEI50454.1
Nicotinate-nucleotide pyrophosphorylase.
     0.714
AEI48251.1
ABC transporter related protein.
      0.674
AEI51824.1
Ribosomal RNA small subunit methyltransferase I.
 
      0.644
AEI49839.1
Domain of unknown function DUF2520-containing protein.
 
   
 0.642
AEI47256.1
Pseudouridine synthase.
       0.626
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.