STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47260.1Rhomboid family protein. (259 aa)    
Predicted Functional Partners:
AEI47261.1
Rhomboid family protein.
 
     0.877
AEI48644.1
Rhomboid family protein.
  
     0.717
AEI47259.1
DNA mismatch repair protein mutL.
  
    0.631
AEI49403.1
Sec-independent protein translocase protein tatA/E-like protein.
   
 
 0.541
AEI47923.1
Tetratricopeptide TPR_2 repeat-containing protein.
 
     0.528
AEI50373.1
TonB-dependent receptor.
  
     0.481
AEI49211.1
5-formyltetrahydrofolate cyclo-ligase.
  
  
 0.473
AEI50432.1
Surface antigen (D15).
  
     0.449
AEI50657.1
TraR/DksA family transcriptional regulator.
  
     0.449
AEI48773.1
Outer membrane protein assembly complex, YaeT protein.
  
     0.437
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.