STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47275.1Metal dependent phosphohydrolase. (410 aa)    
Predicted Functional Partners:
AEI47277.1
(3R)-hydroxymyristoyl-(acyl-carrier- protein)dehydratase.
       0.808
AEI47276.1
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase.
       0.806
AEI46618.1
Deoxyadenosine kinase.
    
 
 0.765
AEI47278.1
acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase.
       0.617
AEI47274.1
Peptidyl-prolyl cis-trans isomerase cyclophilin type.
   
   0.564
AEI51538.1
Orotate phosphoribosyltransferase.
  
     0.479
AEI47273.1
Hypothetical protein.
       0.428
AEI47272.1
Putative two component, sigma54 specific, transcriptional regulator.
       0.419
AEI47554.1
Phosphoribosylformylglycinamidine cyclo-ligase.
 
    0.406
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.