STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47280.1Membrane-bound dehydrogenase domain protein. (1010 aa)    
Predicted Functional Partners:
AEI48321.1
Hypothetical protein.
 
     0.929
AEI46663.1
Glucose/sorbosone dehydrogenase.
  
     0.712
AEI48048.1
Blue (type 1) copper domain protein.
  
     0.686
AEI49068.1
Cytochrome c class I.
 
     0.676
AEI47091.1
Hypothetical protein.
 
     0.646
AEI47750.1
Oxidoreductase domain protein.
  
     0.640
AEI47279.1
Polysaccharide deacetylase.
 
     0.620
AEI46662.1
Blue (type 1) copper domain protein.
  
     0.614
AEI51811.1
Protein of unknown function DUF1080.
  
     0.609
AEI48140.1
Hypothetical protein.
  
     0.565
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.