STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI47284.1Peptidase S16 lon domain protein. (209 aa)    
Predicted Functional Partners:
AEI46535.1
SMC domain protein.
    
 0.681
AEI47283.1
Gliding motility-associated lipoprotein GldH.
 
     0.676
AEI48941.1
UBA/THIF-type NAD/FAD binding protein.
    
 0.676
AEI50815.1
Hypothetical protein.
    
  0.637
AEI51507.1
Forkhead-associated protein.
     
 0.624
AEI51509.1
Forkhead-associated protein.
     
 0.624
AEI46534.1
Nuclease SbcCD, D subunit.
    
 0.579
AEI48620.1
Metallophosphoesterase.
    
 0.579
AEI49828.1
Metallophosphoesterase.
    
 0.579
AEI47282.1
Polysaccharide biosynthesis protein.
       0.543
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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