STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47284.1Peptidase S16 lon domain protein. (209 aa)    
Predicted Functional Partners:
AEI47283.1
Gliding motility-associated lipoprotein GldH.
 
     0.674
AEI47282.1
Polysaccharide biosynthesis protein.
       0.543
AEI49409.1
LytTr DNA-binding region.
  
    0.499
AEI51499.1
Hypothetical protein.
  
     0.485
AEI48941.1
UBA/THIF-type NAD/FAD binding protein.
    
 0.481
AEI46535.1
SMC domain protein.
   
 0.471
AEI49331.1
Hypothetical protein.
  
     0.432
AEI49836.1
Protein of unknown function DUF422.
  
     0.419
AEI50419.1
Hypothetical protein.
  
     0.414
AEI47477.1
Hypothetical protein.
  
     0.400
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.