STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI47288.1Phenylacetic acid degradation-related protein. (149 aa)    
Predicted Functional Partners:
AEI47289.1
Glucomannan 4-beta-mannosyltransferase.
       0.648
AEI47287.1
Glycosyl transferase group 1.
  
    0.635
AEI49087.1
Phosphate acyltransferase.
  
  
 0.525
AEI47285.1
Guanine deaminase.
       0.457
AEI47286.1
Sarcosine oxidase.
       0.457
AEI51807.1
3-hydroxybutyryl-CoA epimerase.
 
 
 0.452
AEI49947.1
Adenylosuccinate synthetase.
  
    0.426
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.