STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47299.1Glycosyl hydrolase family 88. (465 aa)    
Predicted Functional Partners:
AEI47297.1
3-oxoacyl-(acyl-carrier-protein) reductase.
 
     0.881
AEI47298.1
NADH:flavin oxidoreductase/NADH oxidase.
 
     0.739
AEI51832.1
Protein of unknown function DUF1501.
  
     0.572
AEI50593.1
Hypothetical protein.
  
     0.564
AEI49496.1
FG-GAP repeat-containing protein.
  
     0.542
AEI51759.1
Phytanoyl-CoA dioxygenase.
  
     0.529
AEI51833.1
Protein of unknown function DUF1549.
  
     0.508
AEI47279.1
Polysaccharide deacetylase.
  
     0.506
AEI49132.1
Two component regulator propeller domain protein.
  
     0.482
AEI47300.1
Gluconate transporter.
       0.468
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.