Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47313.1RNA polymerase, sigma-24 subunit, ECF subfamily. (196 aa)    
Predicted Functional Partners:
AEI47312.1
anti-FecI sigma factor, FecR.
 
   0.893
AEI51244.1
anti-FecI sigma factor, FecR.
  
   0.747
AEI49692.1
anti-FecI sigma factor, FecR.
  
   0.718
AEI47426.1
anti-FecI sigma factor, FecR.
  
   0.711
AEI47305.1
anti-FecI sigma factor, FecR.
  
   0.700
AEI51239.1
anti-FecI sigma factor, FecR.
  
   0.684
AEI46869.1
anti-FecI sigma factor, FecR.
  
   0.681
AEI49063.1
anti-FecI sigma factor, FecR.
  
   0.672
AEI51236.1
anti-FecI sigma factor, FecR.
  
   0.666
AEI50545.1
anti-FecI sigma factor, FecR.
  
   0.665
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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